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Copyright: Huckenbeck/Scheil: The Distribution of the Human DNA-PCR Polymorphisms, Supplement 98/99/00/01/02/03/04
HPRTB
In X-linked polymorphisms it is not convenient to calculate combined allele frequencies for males and females. In most of the published data there is no hint for the portion of males and females. In contrast to the other tables, "n" in the following table means the number of alleles, not the number of individuals (*except for the data from South Germany).
|
Europe |
|||||
|
Population |
Europe (Basques, Catalans, Northern Italians, Northern Europeans) |
Basques (Females) |
Basques (Males) |
Belgium (Flanders) |
Germany (South) |
|
Ref. |
(1) |
(2) |
(2) |
(9) |
(7) |
|
n |
340 |
372 |
140 |
315 |
661* |
|
Alleles |
|||||
|
6 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
7 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
8 |
0.0000 |
0.0108 |
0.0000 |
0.0000 |
0.0000 |
|
9 |
0.0020 |
0.0000 |
0.0000 |
0.0090 |
0.0050 |
|
10 |
0.0020 |
0.0108 |
0.0143 |
0.0030 |
0.0140 |
|
11/11A |
0.0110 |
0.1478 |
0.1929 |
0.1280 |
0.1310 |
|
12/12A |
0.1200 |
0.3925 |
0.3929 |
0.3670 |
0.2880 |
|
13 |
0.3670 |
0.2419 |
0.2571 |
0.2840 |
0.3220 |
|
14 |
0.2730 |
0.1452 |
0.0929 |
0.1650 |
0.1520 |
|
15 |
0.1470 |
0.0512 |
0.0357 |
0.0430 |
0.0730 |
|
16 |
0.0700 |
0.0000 |
0.0071 |
0.0090 |
0.0160 |
|
17 |
0.0020 |
0.0000 |
0.0071 |
0.0000 |
0.0000 |
|
18 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
S |
0.9940 |
1.0002 |
1.0000 |
1.0080 |
1.0010 |
|
Europe |
America |
||||
|
Population |
Hungary |
Poland (Southeast, Females) |
Poland (Southeast, Males) |
United Kingdom |
America (Mayas, Surui, Karitiana) |
|
Ref. |
(3) |
(10) |
(10) |
(4) |
(1) |
|
n |
242 |
114* |
100* |
364 |
50 |
|
Alleles |
|||||
|
6 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
7 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
8 |
0.0050 |
0.0090 |
0.0000 |
0.0000 |
0.0000 |
|
9 |
0.0200 |
0.0170 |
0.0100 |
0.0030 |
0.0000 |
|
10 |
0.0100 |
0.0090 |
0.0000 |
0.0230 |
0.0000 |
|
11 |
0.1320 |
0.1100 |
0.1100 |
0.1600 |
0.0000 |
|
12 |
0.3530 |
0.4080 |
0.3100 |
0.3380 |
0.1190 |
|
13 |
0.2840 |
0.2760 |
0.4000 |
0.2820 |
0.2800 |
|
14 |
0.1370 |
0.1360 |
0.1500 |
0.1370 |
0.3790 |
|
15 |
0.0540 |
0.0350 |
0.0200 |
0.0530 |
0.1590 |
|
16 |
0.0050 |
0.0000 |
0.0000 |
0.0050 |
0.0590 |
|
17 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
18 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
S |
1.0000 |
1.0000 |
1.0000 |
1.0010 |
0.9960 |
|
America, North |
|||||
|
Population |
USA (Afro-Americans) |
USA (Afro-Americans) |
USA (Asiatics) |
USA (Caucasoids) |
USA (Caucasoids) |
|
Ref. |
(5) |
(6) |
(6) |
(5) |
(6) |
|
n |
218 |
276 |
98 |
214 |
417 |
|
Alleles |
|||||
|
6 |
0.0000 |
0.0040 |
0.0000 |
0.0000 |
0.0000 |
|
7 |
0.0000 |
0.0000 |
0.0000 |
0.0050 |
0.0020 |
|
8 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
9 |
0.0230 |
0.0180 |
0.0000 |
0.0280 |
0.0050 |
|
10 |
0.0180 |
0.0150 |
0.0000 |
0.0510 |
0.0100 |
|
11 |
0.1060 |
0.0690 |
0.0710 |
0.1360 |
0.1340 |
|
12 |
0.3490 |
0.2570 |
0.0000 |
0.3410 |
0.3430 |
|
13 |
0.2110 |
0.3040 |
0.2040 |
0.2290 |
0.2950 |
|
14 |
0.2020 |
0.2460 |
0.5100 |
0.1500 |
0.1560 |
|
15 |
0.0730 |
0.0830 |
0.1220 |
0.0470 |
0.0430 |
|
16 |
0.0180 |
0.0040 |
0.0820 |
0.0140 |
0.0120 |
|
17 |
0.0000 |
0.0000 |
0.0100 |
0.0000 |
0.0000 |
|
18 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
S |
1.0000 |
1.0000 |
0.9990 |
1.0010 |
1.0000 |
|
America, North |
America, Central |
America, South |
|||
|
Population |
USA (Hispanics) |
USA (Hispanics) |
Mexico (Jalisco) |
Argentina (Caucasoids, Buenos Aires) |
Argentina (Mapuche, Rio Negro Province) |
|
Ref. |
(5) |
(6) |
(11) |
(8) |
(8) |
|
n |
214 |
210 |
233 |
278 |
62 |
|
Alleles |
|||||
|
6 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
7 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
8 |
0.0000 |
0.0000 |
0.0043 |
0.0000 |
0.0000 |
|
9 |
0.0000 |
0.0050 |
0.0043 |
0.0000 |
0.0000 |
|
10 |
0.0050 |
0.0000 |
0.0086 |
0.0320 |
0.0000 |
|
11 |
0.0650 |
0.0620 |
0.0730 |
0.1790 |
0.0320 |
|
12 |
0.2760 |
0.3000 |
0.2790 |
0.3160 |
0.3220 |
|
13 |
0.3690 |
0.3710 |
0.3047 |
0.2840 |
0.4000 |
|
14 |
0.2100 |
0.2000 |
0.2017 |
0.1370 |
0.2410 |
|
15 |
0.0560 |
0.0620 |
0.1116 |
0.0470 |
0.0000 |
|
16 |
0.0190 |
0.0000 |
0.0129 |
0.0030 |
0.0000 |
|
17 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
18 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
S |
1.0000 |
1.0000 |
1.0001 |
0.9980 |
0.9950 |
|
America, South |
Asia |
||||
|
Population |
Argentina (Tehuelche, Chubut Province) |
Argentina (Wichi, Salta Province) |
Brazil (Pernam-buco) |
Brazil (Rio de Janeiro) |
Asia (Chinese, Japanese, Cambodian) |
|
Ref. |
(8) |
(8) |
(14) |
(13) |
(1) |
|
n |
22 |
42 |
254 |
140 |
46 |
|
Alleles |
|||||
|
6 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
7 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
8 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
9 |
0.0000 |
0.0000 |
0.0160 |
0.0140 |
0.0000 |
|
10 |
0.0000 |
0.0000 |
0.0200 |
0.0140 |
0.0000 |
|
11 |
0.0900 |
0.0000 |
0.1460 |
0.0770 |
0.0000 |
|
12 |
0.2200 |
0.3500 |
0.2950 |
0.2950 |
0.1660 |
|
13 |
0.5900 |
0.1600 |
0.3190 |
0.3480 |
0.1250 |
|
14 |
0.0900 |
0.3500 |
0.1650 |
0.1880 |
0.3330 |
|
15 |
0.0000 |
0.1100 |
0.0240 |
0.0580 |
0.1450 |
|
16 |
0.0000 |
0.0000 |
0.0160 |
0.0050 |
0.2080 |
|
17 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0200 |
|
18 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
S |
0.9900 |
0.9700 |
1.0010 |
0.9990 |
0.9970 |
|
Asia, Far East |
||||
|
Population |
China (Han, Shanghai, Female) |
China (Han, Shanghai, Male) |
China (Han, Guangzhou, Female) |
China (Han, Guangzhou, Male) |
|
Ref. |
(12) |
(12) |
(12) |
(12) |
|
n |
98 |
49 |
70 |
47 |
|
Alleles |
||||
|
6 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
7 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
8 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
9 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
10 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
11 |
0.0000 |
0.0000 |
0.0000 |
0.0000 |
|
12 |
0.0610 |
0.0410 |
0.0570 |
0.1060 |
|
13 |
0.2450 |
0.2860 |
0.2710 |
0.2980 |
|
14 |
0.5610 |
0.4690 |
0.4860 |
0.3620 |
|
15 |
0.0820 |
0.1840 |
0.1140 |
0.1700 |
|
16 |
0.0410 |
0.0000 |
0.0720 |
0.0430 |
|
17 |
0.0000 |
0.0200 |
0.0000 |
0.0000 |
|
18 |
0.0100 |
0.0000 |
0.0000 |
0.0210 |
|
S |
1.0000 |
1.0000 |
1.0000 |
1.0000 |
|
Oceania: Australia, Melanesia, Polynesia |
Africa |
|
|
Population |
Pacific (Australian Aborigines, Papua New Guinea, Naisoi Melanesians) |
Africa (Mbuti and Biaka, Lisongo) |
|
Ref. |
(1) |
(1) |
|
n |
47 |
44 |
|
Alleles |
||
|
6 |
0.0000 |
0.0000 |
|
7 |
0.0000 |
0.0000 |
|
8 |
0.0000 |
0.0000 |
|
9 |
0.0000 |
0.0000 |
|
10 |
0.0000 |
0.0000 |
|
11 |
0.0000 |
0.0220 |
|
12 |
0.1060 |
0.1130 |
|
13 |
0.3610 |
0.2040 |
|
14 |
0.2120 |
0.2720 |
|
15 |
0.1700 |
0.2270 |
|
16 |
0.0850 |
0.1360 |
|
17 |
0.0630 |
0.0220 |
|
18 |
0.0000 |
0.0000 |
|
S |
0.9970 |
0.9960 |
(1) Pérez-Lezaun, A., Calafell, F., Mateu, E., Comas, D., Bosch, E., Bertranpetit, J. (1997) Allele frequencies for 20 microsatellites in a worldwide population survey. Hum. Hered. 47: 189-196
(2) Iriondo, M., Barbero, M. C., Izagirre, N., Manzano, C. (1997) Data on six short-tandem repeat polymorphisms in an autochthonous Basque population. Hum. Hered. 47: 131-137
(3) Füredi, S., Budowle, B., Woller, J., Pádár, Z. (1996) Hungarian population data on six STR loci - HUMVWFA31, HUMTH01, HUMCSF1PO, HUMFES/FPS, HUMTPOX, and HUMHPRTB - derived using multiplex PCR amplification and manual typing. Int. J. Legal Med. 109: 100-101
(4) Pai, A. P., Jackson, T., Pritchard, D. J., Papiha, S. S. (1994) Population genetic studies of short tandem repeat loci (STRs): efficiency in paternity testing. Adv. Forens. Haemogenet. 5: 184-186
(5) Promega Corp. (1996) Gene PrintTM STR systems, Technical Manual
(6) Edwards, A., Hammond, H. A., Jin, L., Caskey, T., Chakraborty, R. (1992) Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics 12: 241-253
(7) Bender, K., Beller, G., Lautsch, S. (1998) Tetranucleotide short tandem repeat polymorphisms and their possible mode of origin. Cytogenet. Cell Genet. 80: 34-36
(8) Sala, A., Penacino, G., Corach, D. (1998) Comparison of allele frequencies of eight STR loci from Argentinian Amerindian and European populations. Hum. Biol. 70: 937-947
(9) Mertens, G., Mommers, N., Heylen, H., Gielis, M., Muylle, L., Vandenberghe, A. (1997) Allele frequencies of nine STR systems in the Flemish population and application in parentage testing. Int. J. Legal Med. 110: 177-180
(10) Koziol, P., Czerski, T., Madro, R. (1999) Population genetic data for HumF13B, HumLPL and HumHPRTB in southeast Poland. Int. J. Legal Med. 113: 55-57
(11) Rangel-Villalobos, H., Rivas, F., Torres-Rodríguez, M., Jaloma-Cruz, A.R., Gallegos-Arreola, M.P., López-Satow, J., Cantú, J.M., Figuera, L.E. (1999) Allele frequency distributions of six Amp-FLPS (D1S80, APO-B, VWA, TH01, CSF1PO and HPRTB) in a Mexican population. Forensic Sci. Int.105: 125-129
(12) Xiao, F.-X., Gilissen, A., Gu, X.-X., Cassiman, J.-J., Decorte, R. (1998) Genetic data obtained for two Chinese Han populations with a quadruplex fluorescent STR typing system (HUMVWA, HUMTH01, D21S11 and HPRT). Int. J. Legal Med. 111: 343-345
(13) Barros de Castro, I.A., Rinzler, C.M.C., Rumjanek, F.D. (2000) Allele frequency distributions for twelve STR loci in a Brazilian population. J. Forensic Sci. 45: 941
(14) Mauricio da Silva, L., Silva, R.S., Dellalibera, E., Donadi, E.A. (2000) Population genetics of HPRTB, F13B, and LPL in Pernambuco, Northeast Brazil. J. Forensic Sci. 45: 684-686
Recalculated data and misprints of the book (correct data in red)
(1) Pérez-Lezaun, A., Calafell, F., Mateu, E., Comas, D., Bosch, E., Bertranpetit, J. (1997) Allele frequencies for 20 microsatellites in a worldwide population survey. Hum. Hered. 47: 189-196
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